Protein Phosphatase 1D (PPM1D) Structure Prediction Using Homology Modeling

Homology Modeling in CASP6 (Critical Assessment of Techniques for Protein Structure Prediction) Using CHIMERA and FAMS

Advances in homology protein structure modeling.

Homology modeling plays a central role in determining protein structure in the structural genomics project. The importance of homology modeling has been steadily increasing because of the large gap that exists between the overwhelming number of available protein sequences and experimentally solved protein structures, and also, more importantly, because of the increasing reliability and accuracy...

Protein Structure Prediction in 1D, 2D, and 3D

Abbreviations 1D D one-dimensional; 1D structure D one-dimensional (e.g., sequence or string of secondary structure); 2D D two-dimensional; 2D structure D two-dimensional (e.g., interresidue distances); 3D D three-dimensional; 3D structure D three-dimensional (coordinates of protein structure); PDB D Protein Data Bank of experimentally determined 3D structures of proteins; SWISS-PROT D database...

Homology modeling and consensus protein disorder prediction of human filamin

Filamins are dimeric actin-binding proteins participating in the organization of the actin-based cytoskeleton. Their modular domain organization is made up of an N-terminal actin-binding domain composed of two CH domains followed by flexible rod regions that consist of 24 Ig-like domains. Homology modeling was used to model human filamin using Modeller 9v5. The resulting model assessed by Verif...

Z-score for Homology Modeling and Structure Prediction of Globular Protein of Homosapiens & Plant

The Swiss model is a web-based integrated protein structure homology modelling software. The main objective of this paper is to compare the homosapiens and plant globular protein using modeling software. Here we focus on the pairwise energy, solvation energies and C-β interaction among the proteins based on Z score. From the simulation, it observes that Myoglobin and Neuroglobin pseudo-properti...